Research

Local adaptation represents the first step to biological diversification and speciation. Elucidating the genetic mechanisms underlying this process therefore constitutes a key question in the field of evolutionary biology. Mutations as well as chromosome rearrangements have been shown to be involved in this evolutionary process. However, to what extent other sources of genetic variation influence the evolution of natural populations remains poorly understood. To this regard, the aim of our project is to better understand how transposable element activation contributes to the evolution of natural populations, using Brachypodium distachyon as a model.

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Publications

Minadakis N, Kaderli L, Horvath R, Xu W, Thieme M, Woods DP, Roulin AC (2023)

Polygenic architecture of flowering time and its relationship with local environments in the grass Brachypodium distachyon (https://doi.org/10.1093/genetics/iyae042)

Genetics, March 2024

Thieme M, Minadakis N, Himber C, [...] Roulin AC (2024)

Transposition of HOPPLA in siRNA-deficient plants suggests a limited effect of the environment on retrotransposon mobility in Brachypodium distachyon (https://doi.org/10.1371/journal.pgen.1011200)

PLoS Genetics, March 2024

Xu W, Thieme M, Roulin AC (2024)

Natural diversity of heat-induced transcription of retrotransposons in Arabidopsis thaliana (https://doi.org/10.1101/2024.01.15.575637 )

bioRxiv, January 2024

Horvath R, Minadakis N, Bourgeois Y, Roulin AC (2023)

The evolution of transposable elements in Brachypodium distachyon is governed by purifying selection, while neutral and adaptive processes play a minor role (https://doi.org/10.7554/eLife.93284.2)

eLife, October 2023

Minadakis N,  Williams H, Horvath R, Cakovic D, Stritt C, Thieme M, Bourgeois YXC, Roulin AC (2023)

The demographic history of the wild crop relative Brachypodium distachyon is shaped by distinct past and present ecological niches (https://doi.org/10.24072/pcjournal.319)

Peer Community Journal, September 2023

Greenwood J, Lacorte-Apostol V, Kroj T, [...] Roulin AC, Padilla A, Zhou B, Keller B, Krattinger SG (2023)

Genome-wide association analysis uncovers novel rice blast resistance alleles (https://doi.org/10.21203/rs.3.rs-2580055/v1)

Research Square, March 2023

Hasterok R, Catalan P, Hazen SP, Roulin AC, Vogel JP, Wang K, Mur LAJ (2022).

Brachypodium: 20 years as a grass biology model system; the way forward? ( https://doi.org/10.1016/j.tplants.2022.04.008)

Trends in Plant Science, October 2022

Thieme M, Brêchet A, Bourgeois Y, Keller B, Bucher E, Roulin AC (2022).

Experimentally heat-induced transposition increases drought tolerance in Arabidopsis thaliana (https://doi.org/10.1111/nph.18322)

New Phytologist, June 2022

Wyler M, Keller B, Roulin AC (2022).

Potential impact of TE-derived sRNA on gene regulation in the grass Brachypodium distachyon (https://doi.org/10.1101/2022.04.05.487121 )

bioRxiv, April 2022

Stritt C, Gimmi EL, Wyler M, Bakali AH, Skalska A, [...] Roulin AC (2022).

Migration without interbreeding: evolutionary history of a highly selfing Mediterranean grass inferred from whole genomes (https://doi.org/10.1111/mec.16207)

Molecular Ecology, January 2022

Stritt C, Thieme M, Roulin AC (2021).

Rare transposable elements challenge the prevailing view of transposition dynamics in plants (https://doi.org/10.1002/ajb2.1709)

American Journal of Botany, August 2021

Manser B, Koller T, Praz CR, Roulin AC, [...], Keller B, Sánchez-Martín J (2021).

Identification of specificity-defining amino acids of the wheat immune receptor Pm2 and powdery mildew effector AvrPm2 (https://doi.org/10.1111/tpj.15214)

The Plant Journal, May 2021

Stritt C, Roulin AC (2021).

Detecting Signatures of TE Polymorphisms in Short-Read Sequencing Data (https://doi.org/10.1007/978-1-0716-1134-0_17)

In: Cho J. Plant Transposable Elements, part of the Methods in Molecular Biology book series, April 2021

Thieme M, Roulin AC (2021).

Identification of Active Transposable Elements in Plants: The Mobilome-Seq Approach. (https://doi.org/10.1007/978-1-0716-1134-0_8)

In: Cho J. Plant Transposable Elements, part of the Methods in Molecular Biology book series, April 2021

Abrouk M, Athiyannan N, Müller T, Pailles Y, Stritt C, Roulin AC, [...] Keller B, Krattinger SG (2021).

Population genomics and haplotype analysis in spelt and bread wheat identifies a gene regulating glume color (https://doi.org/10.1038/s42003-021-01908-6)

Communications Biology, March 2021
 

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